Get the dotplot-heatmap for cell-type-specific enhancer regulons (eRegulons)

plot_dotplot_heatmap(
  obj = NULL,
  cts.en.regs = NULL,
  n.regs = 5,
  celltype.col = "seurat_clusters",
  dot = "AC",
  peak.assay = "ATAC",
  ht.colours = c((grDevices::colorRampPalette(c("#99D5FF", "#E8F9FD")))(3), "#fffaf7",
    (grDevices::colorRampPalette(c("#ffe4e1", "#ee7261")))(3)),
  ht.breaks = NULL,
  font.size = 15,
  text.font = "Arial",
  angle = 30,
  celltypes = NULL,
  vjust = 1,
  hjust = 1,
  celltype.colours = NULL
)

Arguments

obj: A Seurat object, NULL by default
cts.en.regs: The list of cell-type-specific enhancer regulons (eRegulons)
n.regs: The number of top-ranked eRegulons for plotting, 5 by default
celltype.col: The metadata column indicating cell types, "seurat_clusters" by default
dot: What dot sizes represent, "AC" by default
peak.assay: The assay denoting chromatin accessibility, "ATAC" by default
ht.colours: Color list used to define the gradients of the heatmap, c( grDevices::colorRampPalette(c("#99D5FF", "#E8F9FD"))(3), "#fffaf7", grDevices::colorRampPalette(c("#ffe4e1", "#ee7261"))(3) ) by default
ht.breaks: The breaks marked on the legend of heatmap colors
font.size: The font size of legends
text.font: The text font of legends
angle: The angle of labels of the x-axis in the heatmap, 30 by default
celltypes: The list of cell types arranged in an order defined by users
vjust: Adjustment of positions in the vertical direction, 1 by default
hjust: Adjustment of positions in the horizontal direction, 1 by default
celltype.colours: The list of colors of cell types in the row annotations