Prepare TF-enhancer-gene relations to generate coverage plots

prepare_coverage_plot(
  object = NULL,
  links = NULL,
  highlight.colors = NULL,
  peak.assay = "ATAC",
  highlight.width = 500
)

Arguments

object: A Seurat object
links: A list of GRanges object to save the TF-enhancer-gene relations
highlight.colors: The colors of regions to highlight
peak.assay: The scATAC-seq assay
highlight.width: The width of the regions to highlight, i.e., TF binding sites